This section presents a summary of the data import step.
Data type | Bisulfite sequencing data set |
Data source | /TL/deep/fhgfs/projects/epigenomicLandscape/hematopoiesis/03_blueprint_pub/data/proc/GRCh38/methyl/meth_calls/forRnBeads_v05_no_sex |
Genome assembly used | hg38 |
Number of samples | 122 |
Number of sites | 17497832 |
Detection p-values | absent |
coverage information is | present |
The loaded dataset includes a table of sample annotations describing the following traits:
No. | Trait | Missing Values | Type |
1 | bedFile | identifiers or text | |
2 | sampleName | identifiers or text | |
3 | cellTypeCode | categories or text | |
4 | donorId | categories or text | |
5 | donorNumber | numbers | |
6 | nominalCellNumber | all identical | |
7 | actualCellNumber | all identical | |
8 | sex | all identical | |
9 | cellSourceCurated | categories or text | |
10 | ploidy | all identical | |
11 | constituents | identifiers or text | |
12 | library | all identical | |
13 | plateId | categories or text | |
14 | flowcell | categories or text | |
15 | lane | numbers | |
16 | acquisitionDate | 36 | categories or text |
17 | shipmentDate | 46 | categories or text |
18 | dnaPrepDate | categories or text | |
19 | libraryDate | categories or text | |
20 | libraryVolume | 76 | categories or text |
21 | libraryDnaAmount | 76 | categories or text |
22 | reads | 46 | numbers |
23 | cmp_ct_CMPvGMP | 81 | categories or text |
24 | cmp_ct_CMPvCLP | 82 | categories or text |
25 | cmp_ct_CLPvMLP0 | 77 | categories or text |
26 | cmp_ct_HSCvMPP | 86 | categories or text |
27 | cmp_ct_MPPvCMP | 85 | categories or text |
28 | cmp_ct_MPPvMLP0 | 80 | categories or text |
29 | cmp_ct_MPPvCLP | 83 | categories or text |
30 | cmp_ct_HSCvML | 18 | categories or text |
The full sample annotation table is available as a comma-separated value file accompanying this report.